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Thermostable Cocaine Esterase with mutations L169K and G173Q, bound to DTT adduct
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1JU3
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.4 293 1.7 M ammonium sulfate, 25 mM NaCl, 10 mM Tris pH 7.3, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 3.01 59.18
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 108.28 α = 90 b = 108.28 β = 90 c = 227.212 γ = 120
Symmetry Space Group P 65 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD 2008-02-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-D 1.02 APS 21-ID-D
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 25 99.1 0.094 22.4 5 104076 103956
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION Difference fourier 1ju3 1.6 24.59 104076 102995 6117 99.08 0.177 0.17682 0.17682 0.1771 0.195 0.1795 18.658
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.58 0.29 0.58 -0.87
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.06 r_dihedral_angle_4_deg 13.806 r_dihedral_angle_3_deg 11.24 r_dihedral_angle_1_deg 5.729 r_scangle_it 1.495 r_angle_refined_deg 1.193 r_scbond_it 0.969 r_mcangle_it 0.679 r_mcbond_it 0.409 r_nbtor_refined 0.289
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.06 r_dihedral_angle_4_deg 13.806 r_dihedral_angle_3_deg 11.24 r_dihedral_angle_1_deg 5.729 r_scangle_it 1.495 r_angle_refined_deg 1.193 r_scbond_it 0.969 r_mcangle_it 0.679 r_mcbond_it 0.409 r_nbtor_refined 0.289 r_nbd_refined 0.192 r_symmetry_vdw_refined 0.139 r_symmetry_hbond_refined 0.092 r_chiral_restr 0.082 r_xyhbond_nbd_refined 0.073 r_bond_refined_d 0.012 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4374 Nucleic Acid Atoms Solvent Atoms 694 Heterogen Atoms 61
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling