☰ Navigation Tabs
Crystal structure of partially reduced Bacillus anthracis CoADR-RHD
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3ICR
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6 288 8-16% PEG 8000, 2% 2-methyl-2,4-pentanediol, 0.2M potassium acetate, pH 6.0, VAPOR DIFFUSION, SITTING DROP, temperature 288K
Crystal Properties Matthews coefficient Solvent content 2.21 44.28
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 67.37 α = 90 b = 110.47 β = 101.87 c = 80.02 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X26C 0.9790 NSLS X26C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.94 39.16 99.1 0.087 7.1 84704 83942
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.94 1.99 98.2 0.372 2.3 86257
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3ICR 1.94 39.16 79632 4223 99.03 0.18544 0.18314 0.1843 0.22809 0.2288 RANDOM 40.778
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.16 0.09 -0.1 -0.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.371 r_dihedral_angle_4_deg 20.556 r_dihedral_angle_3_deg 14.142 r_dihedral_angle_1_deg 5.59 r_scangle_it 2.754 r_scbond_it 1.859 r_angle_refined_deg 1.265 r_mcangle_it 1.056 r_mcbond_it 0.859 r_nbtor_refined 0.304
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.371 r_dihedral_angle_4_deg 20.556 r_dihedral_angle_3_deg 14.142 r_dihedral_angle_1_deg 5.59 r_scangle_it 2.754 r_scbond_it 1.859 r_angle_refined_deg 1.265 r_mcangle_it 1.056 r_mcbond_it 0.859 r_nbtor_refined 0.304 r_nbd_refined 0.197 r_symmetry_vdw_refined 0.188 r_xyhbond_nbd_refined 0.12 r_symmetry_hbond_refined 0.12 r_chiral_restr 0.081 r_bond_refined_d 0.009 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8596 Nucleic Acid Atoms Solvent Atoms 728 Heterogen Atoms 229
Software Software Software Name Purpose CBASS data collection REFMAC refinement d*TREK data reduction d*TREK data scaling REFMAC phasing