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Crystal structure of oxidized Bacillus anthracis CoADR-RHD
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other 3 wavelength MAD structure deteremined on Selenomethionine-containing CoADR-RHD
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6 288 8-16% PEG 8000, 2% 2-methyl-2,4-pentanediol, 0.2M potassium acetate, pH 6.0, VAPOR DIFFUSION, SITTING DROP, temperature 288K
Crystal Properties Matthews coefficient Solvent content 2.21 44.38
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 67.48 α = 90 b = 110.47 β = 101.69 c = 79.99 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RIGAKU SATURN 92 Confocal Blue Max-Flux M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 42.56 99.3 0.097 33.6 66890 66422
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.154 92.5 0.302 7.5 61873
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3 wavelength MAD structure deteremined on Selenomethionine-containing CoADR-RHD 2.1 42.56 62945 3353 99.03 0.17594 0.17366 0.1753 0.21833 0.2182 RANDOM 23.417
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.05 0.06 -0.09 0.06
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.288 r_dihedral_angle_4_deg 19.836 r_dihedral_angle_3_deg 14.042 r_dihedral_angle_1_deg 5.684 r_scangle_it 2.717 r_scbond_it 1.81 r_angle_refined_deg 1.268 r_mcangle_it 1.045 r_mcbond_it 0.794 r_nbtor_refined 0.304
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.288 r_dihedral_angle_4_deg 19.836 r_dihedral_angle_3_deg 14.042 r_dihedral_angle_1_deg 5.684 r_scangle_it 2.717 r_scbond_it 1.81 r_angle_refined_deg 1.268 r_mcangle_it 1.045 r_mcbond_it 0.794 r_nbtor_refined 0.304 r_nbd_refined 0.2 r_symmetry_vdw_refined 0.187 r_symmetry_hbond_refined 0.147 r_xyhbond_nbd_refined 0.13 r_chiral_restr 0.082 r_bond_refined_d 0.01 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8596 Nucleic Acid Atoms Solvent Atoms 665 Heterogen Atoms 202
Software Software Software Name Purpose CrystalClear data collection REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling REFMAC phasing