☰ Navigation Tabs
Crystal structure of AsnC family transcriptional regulator from Agrobacterium tumefaciens
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.6 273 0.1M NA(OAC), 3.2M NACL, pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 273K
Crystal Properties Matthews coefficient Solvent content 3.32 62.91
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 141.833 α = 90 b = 141.833 β = 90 c = 50.283 γ = 90
Symmetry Space Group I 4 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ARGONNE APS1 CCD MIRROR 2007-06-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-BM 0.9767 APS 19-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 50 99.9 0.145 0.145 22.89 12.9 13438 13438 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.24 99.9 0.98 0.98 2.2 13.2 654
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.3 50 11658 11658 568 99.5 0.189 0.189 0.188 0.2332 0.214 0.2604 RANDOM 21.78
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.13 -1.13 2.26
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.265 r_dihedral_angle_4_deg 18.158 r_dihedral_angle_3_deg 16.819 r_dihedral_angle_1_deg 6.999 r_scangle_it 3.213 r_scbond_it 1.976 r_angle_refined_deg 1.526 r_mcangle_it 1.2 r_angle_other_deg 0.967 r_mcbond_it 0.671
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.265 r_dihedral_angle_4_deg 18.158 r_dihedral_angle_3_deg 16.819 r_dihedral_angle_1_deg 6.999 r_scangle_it 3.213 r_scbond_it 1.976 r_angle_refined_deg 1.526 r_mcangle_it 1.2 r_angle_other_deg 0.967 r_mcbond_it 0.671 r_mcbond_other 0.16 r_chiral_restr 0.093 r_bond_refined_d 0.017 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1219 Nucleic Acid Atoms Solvent Atoms 117 Heterogen Atoms 10
Software Software Software Name Purpose HKL-3000 data collection HKL-2000 data reduction HKL-3000 phasing MLPHARE phasing DM model building SHELXD phasing RESOLVE model building ARP model building Coot model building REFMAC refinement HKL-3000 data reduction HKL-3000 data scaling DM phasing SHELXE model building RESOLVE phasing CCP4 phasing