☰ Navigation Tabs
Cobalt-substituted metallo-beta-lactamase from Bacillus cereus: residue Cys168 fully oxidized
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.8 293 0.1 M Sodium cacodylate, 0.1 M Sodium tartrate, 18% PEG 3350, 40 mM CoSO4, 1 mM DTT, pH 5.8, Vapor diffusion, hanging drop, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.28 46.01
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 53.188 α = 90 b = 61.822 β = 93.24 c = 69.521 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MAR scanner 345 mm plate mirrors 2007-10-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 HF 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.549 40.291 91.3 0.049 0.049 9.129 3.6 30132
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.54 1.63 77.8 0.363 0.363 2.1 3.2 3764
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.55 40.29 30132 1524 92.21 0.153 0.151 0.1878 0.186 0.2179 RANDOM 18.112
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.22 -0.58 1.32 -1.16
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.208 r_dihedral_angle_4_deg 15.153 r_dihedral_angle_3_deg 12.162 r_sphericity_free 11.234 r_dihedral_angle_1_deg 6.696 r_scangle_it 4.577 r_scbond_it 2.868 r_mcangle_it 1.883 r_angle_refined_deg 1.784 r_angle_other_deg 1.619
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.208 r_dihedral_angle_4_deg 15.153 r_dihedral_angle_3_deg 12.162 r_sphericity_free 11.234 r_dihedral_angle_1_deg 6.696 r_scangle_it 4.577 r_scbond_it 2.868 r_mcangle_it 1.883 r_angle_refined_deg 1.784 r_angle_other_deg 1.619 r_mcbond_it 1.096 r_mcbond_other 0.316 r_chiral_restr 0.128 r_bond_refined_d 0.02 r_gen_planes_refined 0.009 r_gen_planes_other 0.004 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1647 Nucleic Acid Atoms Solvent Atoms 266 Heterogen Atoms 1
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling AMoRE phasing REFMAC refinement PDB_EXTRACT data extraction