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Bacillus cereus Zn-dependent metallo-beta-lactamase at pH 5.8
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.8 293 0.1 M Sodium cacodylate, 0.1 M Sodium tartrate, 18% PEG 3350, 1 mM ZnSO4, 1 mM DTT, pH 5.8, Vapor diffusion, hanging drop, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.26 45.66
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 53.111 α = 90 b = 61.41 β = 93.06 c = 69.483 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MAR scanner 345 mm plate mirrors 2008-06-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 HF 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.74 20.546 92 0.05 0.05 11.56 2.1 21061
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.74 1.83 90.1 0.401 0.401 1.9 2.1 2997
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.74 20.55 21059 1045 91.69 0.161 0.159 0.217 0.2516 RANDOM 23.989
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.95 -0.38 1.6 -0.69
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.638 r_dihedral_angle_4_deg 14.171 r_dihedral_angle_3_deg 13.204 r_dihedral_angle_1_deg 6.479 r_scangle_it 4.327 r_scbond_it 2.714 r_angle_refined_deg 1.76 r_mcangle_it 1.608 r_angle_other_deg 1.04 r_mcbond_it 0.987
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.638 r_dihedral_angle_4_deg 14.171 r_dihedral_angle_3_deg 13.204 r_dihedral_angle_1_deg 6.479 r_scangle_it 4.327 r_scbond_it 2.714 r_angle_refined_deg 1.76 r_mcangle_it 1.608 r_angle_other_deg 1.04 r_mcbond_it 0.987 r_mcbond_other 0.352 r_chiral_restr 0.11 r_bond_refined_d 0.021 r_gen_planes_refined 0.009 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1628 Nucleic Acid Atoms Solvent Atoms 220 Heterogen Atoms 2
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling AMoRE phasing REFMAC refinement PDB_EXTRACT data extraction