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Crystal structure of protein of unknown function (DUF1255,PF06865) from Acinetobacter sp. ADP1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 289 25% Peg 3350
.2 M Lithium sulfate
0.1 M Hepes pH7.5, VAPOR DIFFUSION, SITTING DROP, temperature 289K
Crystal Properties Matthews coefficient Solvent content 1.87 34.29
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 65.05 α = 90 b = 25.952 β = 90 c = 55.23 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210r double crystal 2009-02-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-BM 0.9794 APS 19-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.65 25.5 98.4 0.04 51 4.6 11655 11471 2 2 29.5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.65 1.72 95.3 0.115 13 4.2 1094
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (I) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.66 25.5 2 2 11446 10901 545 98.27 0.17 0.16471 0.16278 0.1955 0.2015 0.2309 RANDOM 8.882
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.45 0.14 1.31
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.495 r_dihedral_angle_4_deg 21.505 r_dihedral_angle_3_deg 12.05 r_dihedral_angle_1_deg 7.077 r_scangle_it 4.104 r_scbond_it 2.623 r_mcangle_it 1.954 r_angle_refined_deg 1.596 r_mcbond_it 1.143 r_angle_other_deg 0.914
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.495 r_dihedral_angle_4_deg 21.505 r_dihedral_angle_3_deg 12.05 r_dihedral_angle_1_deg 7.077 r_scangle_it 4.104 r_scbond_it 2.623 r_mcangle_it 1.954 r_angle_refined_deg 1.596 r_mcbond_it 1.143 r_angle_other_deg 0.914 r_mcbond_other 0.35 r_chiral_restr 0.105 r_bond_refined_d 0.019 r_gen_planes_refined 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 829 Nucleic Acid Atoms Solvent Atoms 102 Heterogen Atoms
Software Software Software Name Purpose SBC-Collect data collection SHELX model building ARP/wARP model building Coot model building REFMAC refinement HKL-3000 data reduction HKL-3000 data scaling SHELX phasing