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Crystal Structure of S. aureus Pyruvate Carboxylase in complex with Coenzyme A
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 293 20% PEG 3350, 0.2M ammonium tartrate, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.88 57.29
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 96.586 α = 90 b = 164.466 β = 90 c = 373.346 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2008-07-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X4A 0.979 NSLS X4A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.9 30 95.5 0.139 8.65 6.9 124420
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.9 3 99.9 0.478 4.7 12849
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.9 29.97 118417 5969 89.78 0.268 0.264 0.2665 0.328 0.3217 RANDOM 67.901
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.23 0.49 -0.26
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.71 r_dihedral_angle_3_deg 20.601 r_dihedral_angle_4_deg 19.701 r_dihedral_angle_1_deg 6.05 r_scangle_it 1.361 r_angle_refined_deg 1.278 r_scbond_it 0.806 r_mcangle_it 0.578 r_mcbond_it 0.31 r_chiral_restr 0.086
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.71 r_dihedral_angle_3_deg 20.601 r_dihedral_angle_4_deg 19.701 r_dihedral_angle_1_deg 6.05 r_scangle_it 1.361 r_angle_refined_deg 1.278 r_scbond_it 0.806 r_mcangle_it 0.578 r_mcbond_it 0.31 r_chiral_restr 0.086 r_bond_refined_d 0.009 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 31007 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 226
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling COMO phasing REFMAC refinement PDB_EXTRACT data extraction