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Structure of the Human Fatty Acid Synthase KS-MAT Didomain as a Framework for Inhibitor Design.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2VZ9
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 microbatch under oil 6.5 294 0.1M MES pH 6.5, 0.1M NaCl, 12% PEG4000, microbatch under oil, temperature 294K
Crystal Properties Matthews coefficient Solvent content 2.12 41.97
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 86.62 α = 73.84 b = 91.16 β = 86.83 c = 132.11 γ = 62.54
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2005-10-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 0.9796 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.15 45.64 97.5 0.093 24.3 2.6 182578 27.287
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.15 2.23 94.2 0.361 2.5 2.2 17566
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2vz9 2.15 45.64 182506 9152 97.35 0.1707 0.1686 0.1706 0.2108 0.2139 RANDOM 31.5
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -8.45622659 1.76147164 6.78035413 3.40841656 -4.11359802 5.04781003
RMS Deviations Key Refinement Restraint Deviation t_dihedral_angle_d 19.318 t_it 1.448 t_angle_deg 1.001 t_nbd 0.037 t_gen_planes 0.014 t_bond_d 0.007 t_trig_c_planes 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 26026 Nucleic Acid Atoms Solvent Atoms 1808 Heterogen Atoms 2
Software Software Software Name Purpose MOLREP phasing PHASER phasing BUSTER-TNT refinement HKL-2000 data reduction SCALEPACK data scaling