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Universal Stress Protein TeaD from the TRAP transporter TeaABC of Halomonas elongata
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2Z09 Poly alanine model of pdb entry 2Z09
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 291 100mM Tris pH 7.5, 200mM (NH4)2SO4, 15% PEG 3350, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.12 42.1
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 74.05 α = 90 b = 74.65 β = 90 c = 97 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 74 CCD MARMOSAIC 225 mm CCD 2008-12-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 0.9765 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 20 99.8 0.081 4.8 43071 42968 13.21 40.4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.95 99.6 0.734 2.21 3.5 3183
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (I) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT Poly alanine model of pdb entry 2Z09 1.9 20 2 40803 2166 99.88 0.22 0.218 0.2545 0.251 0.2838 RANDOM 36.271
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.72 0.56 -2.27
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.543 r_dihedral_angle_4_deg 14.612 r_dihedral_angle_3_deg 12.27 r_dihedral_angle_1_deg 4.597 r_scangle_it 2.784 r_sphericity_free 2.087 r_scbond_it 1.654 r_mcangle_it 1.465 r_angle_refined_deg 1.075 r_mcbond_it 0.836
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.543 r_dihedral_angle_4_deg 14.612 r_dihedral_angle_3_deg 12.27 r_dihedral_angle_1_deg 4.597 r_scangle_it 2.784 r_sphericity_free 2.087 r_scbond_it 1.654 r_mcangle_it 1.465 r_angle_refined_deg 1.075 r_mcbond_it 0.836 r_angle_other_deg 0.759 r_sphericity_bonded 0.747 r_rigid_bond_restr 0.694 r_mcbond_other 0.29 r_chiral_restr 0.048 r_bond_refined_d 0.006 r_gen_planes_refined 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4258 Nucleic Acid Atoms Solvent Atoms 96 Heterogen Atoms 128
Software Software Software Name Purpose PHASER phasing REFMAC refinement XDS data reduction XSCALE data scaling