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CRYSTAL STRUCTURE OF A PUTATIVE THIOESTERASE (SYN_01977) FROM SYNTROPHUS ACIDITROPHICUS SB AT 2.50 A RESOLUTION
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5 277 10.0000% MPD, 0.1M Citrate pH 5.0, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.27 45.88
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 117.165 α = 90 b = 117.165 β = 90 c = 71.602 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat collimating mirror, toroid focusing mirror 2009-01-16 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-2 0.91837,0.97964,0.97949 SSRL BL9-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 29.591 99.9 0.084 0.084 16.8 7.2 17799 60.865
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.56 100 0.806 0.806 2.4 7.3 1288
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.5 29.591 17760 903 99.89 0.238 0.237 0.2421 0.257 0.2598 RANDOM 74.556
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.23 -2.23 4.45
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.122 r_dihedral_angle_3_deg 11.051 r_dihedral_angle_4_deg 8.167 r_dihedral_angle_1_deg 2.812 r_angle_refined_deg 1.415 r_angle_other_deg 1.211 r_mcangle_it 0.854 r_scangle_it 0.547 r_mcbond_it 0.504 r_scbond_it 0.353
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.122 r_dihedral_angle_3_deg 11.051 r_dihedral_angle_4_deg 8.167 r_dihedral_angle_1_deg 2.812 r_angle_refined_deg 1.415 r_angle_other_deg 1.211 r_mcangle_it 0.854 r_scangle_it 0.547 r_mcbond_it 0.504 r_scbond_it 0.353 r_nbtor_refined 0.136 r_nbd_refined 0.131 r_nbd_other 0.119 r_symmetry_vdw_other 0.091 r_chiral_restr 0.081 r_mcbond_other 0.079 r_symmetry_vdw_refined 0.068 r_nbtor_other 0.066 r_symmetry_hbond_refined 0.061 r_xyhbond_nbd_refined 0.054 r_bond_refined_d 0.012 r_gen_planes_refined 0.003 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3386 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SHELX phasing MolProbity model building SCALA data scaling PDB_EXTRACT data extraction MOSFLM data reduction autoSHARP phasing