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CRYSTAL STRUCTURE OF ENDOGLUCANASE-RELATED PROTEIN FROM Vibrio parahaemolyticus
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 294 60% TACSIMATE, PH 7.0, 10% GLYCEROL, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 294K
Crystal Properties Matthews coefficient Solvent content 3.43 64.18
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 166.124 α = 90 b = 166.124 β = 90 c = 343.534 γ = 120
Symmetry Space Group P 65 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 90 CCD ADSC QUANTUM 315 MIRRORS 2009-04-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X29A NSLS X29A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 50 99.9 0.199 3.8 5.7 124285 -0.5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.38 99.8 0.74 1.4 4.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.3 20 120045 3724 99.95 0.18676 0.18536 0.1856 0.23164 0.2306 RANDOM 35.74
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.66 -0.83 -1.66 2.49
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.957 r_dihedral_angle_3_deg 16.965 r_dihedral_angle_4_deg 16.461 r_scangle_it 9.556 r_scbond_it 7.271 r_dihedral_angle_1_deg 6.135 r_mcangle_it 4.963 r_mcbond_it 3.434 r_angle_refined_deg 1.242 r_nbtor_refined 0.299
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.957 r_dihedral_angle_3_deg 16.965 r_dihedral_angle_4_deg 16.461 r_scangle_it 9.556 r_scbond_it 7.271 r_dihedral_angle_1_deg 6.135 r_mcangle_it 4.963 r_mcbond_it 3.434 r_angle_refined_deg 1.242 r_nbtor_refined 0.299 r_xyhbond_nbd_refined 0.162 r_nbd_refined 0.16 r_symmetry_hbond_refined 0.159 r_symmetry_vdw_refined 0.135 r_chiral_restr 0.098 r_bond_refined_d 0.01 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 13817 Nucleic Acid Atoms Solvent Atoms 910 Heterogen Atoms 30
Software Software Software Name Purpose SHELXD phasing REFMAC refinement DENZO data reduction HKL-2000 data scaling