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CRYSTAL STRUCTURE OF SHORT-CHAIN DEHYDROGENASE FROM Rhodopseudomonas palustris
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.5 294 0.1M CITRIC ACID PH 5.5, 20% PEG3350, 10% GLYCEROL, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 294K
Crystal Properties Matthews coefficient Solvent content 2.59 52.62
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 91.431 α = 90 b = 91.431 β = 90 c = 270.709 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 90 CCD ADSC QUANTUM 315 MIRRORS 2009-04-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X29A NSLS X29A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.87 50 96.7 0.132 4.3 2.9 95778 -0.5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.87 1.94 94.4 0.7 0.8 2.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.87 20 91107 2830 98.22 0.20663 0.2055 0.2089 0.24148 0.2467 RANDOM 34.773
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.1 1.1 -2.19
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.855 r_dihedral_angle_3_deg 15.325 r_dihedral_angle_4_deg 15.219 r_scangle_it 8.535 r_scbond_it 6.115 r_dihedral_angle_1_deg 5.578 r_mcangle_it 4.779 r_mcbond_it 3.7 r_angle_refined_deg 1.316 r_nbtor_refined 0.305
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.855 r_dihedral_angle_3_deg 15.325 r_dihedral_angle_4_deg 15.219 r_scangle_it 8.535 r_scbond_it 6.115 r_dihedral_angle_1_deg 5.578 r_mcangle_it 4.779 r_mcbond_it 3.7 r_angle_refined_deg 1.316 r_nbtor_refined 0.305 r_symmetry_hbond_refined 0.216 r_xyhbond_nbd_refined 0.187 r_nbd_refined 0.164 r_symmetry_vdw_refined 0.099 r_chiral_restr 0.086 r_bond_refined_d 0.01 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6534 Nucleic Acid Atoms Solvent Atoms 425 Heterogen Atoms 21
Software Software Software Name Purpose SHELXD phasing REFMAC refinement DENZO data reduction HKL-2000 data scaling