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Switching the Chirality of the Metal Environment Alters the Coordination Mode in Designed Peptides.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2JGO
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 6.5 293 200 mM MgCl2, 50% PEG 200, pH 6.5, VAPOR DIFFUSION, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.2 44.17
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 77.827 α = 90 b = 29.244 β = 118.8 c = 44.46 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 93 CCD MAR CCD 2007-07-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-D 1.00001 APS 21-ID-D
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.86 50 98.3 0.059 40.189 3.5 7121 7471
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.86 1.93 100 0.211 3.7 748
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2jgo 1.86 24.4 7121 7465 344 98.26 0.202 0.199 0.203 0.255 0.2535 RANDOM 28.08
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.1 0.14 -0.04 0.08
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.394 r_dihedral_angle_3_deg 14.585 r_scangle_it 3.898 r_dihedral_angle_1_deg 3.825 r_scbond_it 3.248 r_angle_refined_deg 1.62 r_mcangle_it 1.465 r_mcbond_it 1.248 r_angle_other_deg 0.913 r_mcbond_other 0.344
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.394 r_dihedral_angle_3_deg 14.585 r_scangle_it 3.898 r_dihedral_angle_1_deg 3.825 r_scbond_it 3.248 r_angle_refined_deg 1.62 r_mcangle_it 1.465 r_mcbond_it 1.248 r_angle_other_deg 0.913 r_mcbond_other 0.344 r_xyhbond_nbd_refined 0.292 r_nbd_refined 0.279 r_symmetry_vdw_refined 0.249 r_symmetry_hbond_refined 0.199 r_nbd_other 0.195 r_symmetry_metal_ion_refined 0.195 r_metal_ion_refined 0.193 r_nbtor_refined 0.183 r_symmetry_vdw_other 0.181 r_nbtor_other 0.13 r_chiral_restr 0.099 r_bond_refined_d 0.019 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 708 Nucleic Acid Atoms Solvent Atoms 70 Heterogen Atoms 11
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction