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Crystal structure of E. coli MccB
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 277.2 2.1 M NaCl, 100 mM Tris-HCl pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 277.2K
Crystal Properties Matthews coefficient Solvent content 5.18 76.24
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 144.649 α = 90 b = 145.035 β = 90 c = 158.688 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2007-05-09 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.1 1.28290, 1.28330, 1.25000 ALS 8.2.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.8 50 100 0.101 27.217 7 81993 81993 71.2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.8 2.9 99.8 0.378 6.5 8093
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.8 49.69 81819 4120 98.78 0.224 0.223 0.222 0.255 0.2528 RANDOM 53.742
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.84 -0.38 2.22
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.206 r_dihedral_angle_3_deg 21.186 r_dihedral_angle_4_deg 18.009 r_dihedral_angle_1_deg 6.452 r_scangle_it 2.973 r_scbond_it 2.007 r_angle_refined_deg 1.509 r_mcangle_it 1.487 r_mcbond_it 0.969 r_nbtor_refined 0.319
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.206 r_dihedral_angle_3_deg 21.186 r_dihedral_angle_4_deg 18.009 r_dihedral_angle_1_deg 6.452 r_scangle_it 2.973 r_scbond_it 2.007 r_angle_refined_deg 1.509 r_mcangle_it 1.487 r_mcbond_it 0.969 r_nbtor_refined 0.319 r_nbd_refined 0.237 r_symmetry_vdw_refined 0.235 r_symmetry_hbond_refined 0.195 r_xyhbond_nbd_refined 0.168 r_chiral_restr 0.103 r_bond_refined_d 0.013 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 11061 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 4
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling SOLVE phasing RESOLVE phasing REFMAC refinement PDB_EXTRACT data extraction BOS data collection