☰ Navigation Tabs
Crystal structure of a cyclic nucleotide-binding domain (mfla_1926) from methylobacillus flagellatus kt at 1.79 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 10 277 NANODROP, 36.0% PEG 3000, 0.1M CHES pH 10.0, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 1.94 36.71
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 60.032 α = 90 b = 39.745 β = 101.85 c = 70.977 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat collimating mirror, toroid focusing mirror 2009-01-18 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-2 0.91837, 0.97956, 0.97944 SSRL BL9-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.79 29.374 99.1 0.09 0.09 6.144 3 30961
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.79 1.84 90.8 0.559 0.559 1.1 2.3 2066
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.79 29.374 30921 1549 98.82 0.17 0.168 0.1737 0.212 0.2161 RANDOM 25.095
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.37 -0.19 1.37 -0.07
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.901 r_dihedral_angle_4_deg 17.166 r_dihedral_angle_3_deg 13.913 r_dihedral_angle_1_deg 5.856 r_scangle_it 2.044 r_mcangle_it 1.967 r_angle_refined_deg 1.569 r_scbond_it 1.415 r_mcbond_it 1.374 r_angle_other_deg 0.99
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.901 r_dihedral_angle_4_deg 17.166 r_dihedral_angle_3_deg 13.913 r_dihedral_angle_1_deg 5.856 r_scangle_it 2.044 r_mcangle_it 1.967 r_angle_refined_deg 1.569 r_scbond_it 1.415 r_mcbond_it 1.374 r_angle_other_deg 0.99 r_mcbond_other 0.345 r_symmetry_vdw_other 0.249 r_nbd_refined 0.211 r_nbd_other 0.195 r_symmetry_vdw_refined 0.182 r_nbtor_refined 0.179 r_xyhbond_nbd_refined 0.172 r_symmetry_hbond_refined 0.15 r_chiral_restr 0.104 r_nbtor_other 0.086 r_bond_refined_d 0.016 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2795 Nucleic Acid Atoms Solvent Atoms 256 Heterogen Atoms 50
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SHELX phasing MolProbity model building SCALA data scaling PDB_EXTRACT data extraction MAR345 data collection MOSFLM data reduction SHELXD phasing autoSHARP phasing