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Crystal structure of acid-beta-glucosidase at pH 4.5, phosphate crystallization condition
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION vapor diffusion
Crystal Properties Matthews coefficient Solvent content 3.24 62.08
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 110.505 α = 90 b = 91.779 β = 111.24 c = 152.751 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 14-BM-C APS 14-BM-C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 34.34 138784
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.2 34.34 138784 6970 96.33 0.223 0.22 0.2198 0.276 0.2736 RANDOM 25.106
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.01 0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.157 r_dihedral_angle_4_deg 21.807 r_dihedral_angle_3_deg 17.716 r_dihedral_angle_1_deg 7.689 r_scangle_it 3.084 r_scbond_it 2.053 r_angle_refined_deg 1.682 r_mcangle_it 1.394 r_mcbond_it 0.823 r_xyhbond_nbd_refined 0.312
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.157 r_dihedral_angle_4_deg 21.807 r_dihedral_angle_3_deg 17.716 r_dihedral_angle_1_deg 7.689 r_scangle_it 3.084 r_scbond_it 2.053 r_angle_refined_deg 1.682 r_mcangle_it 1.394 r_mcbond_it 0.823 r_xyhbond_nbd_refined 0.312 r_nbtor_refined 0.309 r_symmetry_hbond_refined 0.217 r_nbd_refined 0.216 r_symmetry_vdw_refined 0.192 r_chiral_restr 0.115 r_bond_refined_d 0.016 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 15720 Nucleic Acid Atoms Solvent Atoms 1144 Heterogen Atoms 196
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction