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Human DNA polymerase iota in complex with T template DNA and incoming dTTP
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 hanging drop 6.5 15% PEG 5000MME, 0.2M NH4SO4, 0.1M MES 6.5, 5% glycerol, hanging drop
Crystal Properties Matthews coefficient Solvent content 2.65 53.64
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 97.19 α = 90 b = 97.19 β = 90 c = 201.94 γ = 120
Symmetry Space Group P 65 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 2008-03-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 24-ID-C APS 24-ID-C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 27.04 29366
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.2 27.04 28762 604 100 0.21 0.209 0.205 0.258 0.2564 RANDOM 50.342
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.41 -0.2 -0.41 0.61
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.557 r_dihedral_angle_4_deg 21.098 r_dihedral_angle_3_deg 19.021 r_dihedral_angle_1_deg 6.164 r_scangle_it 3.155 r_scbond_it 2.026 r_angle_refined_deg 1.557 r_mcangle_it 1.29 r_mcbond_it 0.653 r_chiral_restr 0.12
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.557 r_dihedral_angle_4_deg 21.098 r_dihedral_angle_3_deg 19.021 r_dihedral_angle_1_deg 6.164 r_scangle_it 3.155 r_scbond_it 2.026 r_angle_refined_deg 1.557 r_mcangle_it 1.29 r_mcbond_it 0.653 r_chiral_restr 0.12 r_bond_refined_d 0.013 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2978 Nucleic Acid Atoms 322 Solvent Atoms 265 Heterogen Atoms 31
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction