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Crystal structure of a resolvase family site-specific recombinase from Streptococcus pneumoniae
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 7 294 20% PEG 3350, 200mM zinc acetate, pH 7.0, vapor diffusion, temperature 294K
Crystal Properties Matthews coefficient Solvent content 2.01 38.91
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 46.991 α = 90 b = 46.991 β = 90 c = 119.259 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm 2009-03-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 31-ID 0.97958 APS 31-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 38.519 99.7 0.087 0.087 14.1 5.9 8257 8232 34.8
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.32 100 0.225 0.225 5.4 6.1 1156
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.2 20 8221 8180 386 99.5 0.229 0.226 0.2363 0.291 0.3004 RANDOM 34.29
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.6 0.8 1.6 -2.4
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.555 r_dihedral_angle_4_deg 20.729 r_dihedral_angle_3_deg 17.81 r_dihedral_angle_1_deg 6.499 r_scangle_it 4.503 r_scbond_it 2.615 r_mcangle_it 1.616 r_angle_refined_deg 1.542 r_angle_other_deg 0.942 r_mcbond_it 0.866
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.555 r_dihedral_angle_4_deg 20.729 r_dihedral_angle_3_deg 17.81 r_dihedral_angle_1_deg 6.499 r_scangle_it 4.503 r_scbond_it 2.615 r_mcangle_it 1.616 r_angle_refined_deg 1.542 r_angle_other_deg 0.942 r_mcbond_it 0.866 r_mcbond_other 0.177 r_chiral_restr 0.08 r_bond_refined_d 0.017 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1143 Nucleic Acid Atoms Solvent Atoms 30 Heterogen Atoms
Software Software Software Name Purpose SCALA data scaling REFMAC refinement PDB_EXTRACT data extraction MAR345 data collection MOSFLM data reduction SHELXCD phasing SHELXE model building