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Crystal Structure of the hspA from Xanthomonas axonopodis
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3GLA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 24% (w/v) PEG 1500, 20 % glycerol, VAPOR DIFFUSION, SITTING DROP, temperature 293 K
Crystal Properties Matthews coefficient Solvent content 3.79 67.53
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 128.59 α = 90 b = 128.59 β = 90 c = 55.29 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm 2006-01-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON LNLS BEAMLINE D03B-MX1 1.43 LNLS D03B-MX1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.15 26.96 0.049 3.8 18680
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3GLA 2.15 26.96 18674 955 100 0.201 0.199 0.1925 0.237 0.2315 RANDOM 26.304
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.01 -0.01 0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.381 r_dihedral_angle_4_deg 20.168 r_dihedral_angle_3_deg 14.647 r_dihedral_angle_1_deg 6.499 r_scangle_it 6.286 r_scbond_it 3.758 r_mcangle_it 2.534 r_angle_refined_deg 2.169 r_mcbond_it 1.374 r_chiral_restr 0.139
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.381 r_dihedral_angle_4_deg 20.168 r_dihedral_angle_3_deg 14.647 r_dihedral_angle_1_deg 6.499 r_scangle_it 6.286 r_scbond_it 3.758 r_mcangle_it 2.534 r_angle_refined_deg 2.169 r_mcbond_it 1.374 r_chiral_restr 0.139 r_bond_refined_d 0.024 r_gen_planes_refined 0.01
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1594 Nucleic Acid Atoms Solvent Atoms 148 Heterogen Atoms
Software Software Software Name Purpose MOSFLM data reduction PHASER phasing REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data collection SCALA data scaling