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Carbonmonoxy Ngb under Xenon pressure
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1W92 PDB ENTRY 1W92
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 293 1.6M ammonium sulphate, 0.1M MES, pH6.5, 10%(v/v) dioxane, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.4 48.77
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 88.68 α = 90 b = 88.68 β = 90 c = 109.83 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm 2007-05-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ELETTRA BEAMLINE 5.2R 1.2 ELETTRA 5.2R
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.25 31.5 97.5 0.056 9.3 7984 7884 3 35.98
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.25 2.37 84.7 0.21 7.6 975
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT PDB ENTRY 1W92 2.26 31.47 7562 7509 374 99.29 0.224 0.19474 0.19201 0.191 0.25444 0.2526 RANDOM 35.347
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.16 -0.58 -1.16 1.74
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.152 r_dihedral_angle_4_deg 24.049 r_dihedral_angle_3_deg 15.127 r_dihedral_angle_1_deg 5.409 r_scangle_it 3.97 r_scbond_it 2.617 r_angle_refined_deg 1.814 r_mcangle_it 1.773 r_mcbond_it 0.95 r_nbtor_refined 0.307
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.152 r_dihedral_angle_4_deg 24.049 r_dihedral_angle_3_deg 15.127 r_dihedral_angle_1_deg 5.409 r_scangle_it 3.97 r_scbond_it 2.617 r_angle_refined_deg 1.814 r_mcangle_it 1.773 r_mcbond_it 0.95 r_nbtor_refined 0.307 r_nbd_refined 0.275 r_symmetry_hbond_refined 0.239 r_symmetry_vdw_refined 0.196 r_xyhbond_nbd_refined 0.152 r_chiral_restr 0.105 r_bond_refined_d 0.013 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1171 Nucleic Acid Atoms Solvent Atoms 47 Heterogen Atoms 98
Software Software Software Name Purpose REFMAC refinement