☰ Navigation Tabs
Crystal Structure of ApcT Transporter
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other Model from SeMet ApcT - Fab complex
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 MICROBATCH 9 293 0.1M Bicine, 0.1M sodium chloride, 39-45% PEG 555 MME, pH 9.0, Microbatch, temperature 293K
Crystal Properties Matthews coefficient Solvent content 3.76 67.28
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 113.482 α = 90 b = 99.499 β = 117.71 c = 72.693 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2007-01-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.2 0.9793 ALS 8.2.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.32 50 99.9 0.106 18.6 7.4 30472 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.32 2.43 99.3 0.715 2.1 7.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3GI9 2.32 50 28918 1551 98.65 0.20405 0.20254 0.2096 0.23274 0.2396 RANDOM 38.294
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -3.23 0.56 1.39 2.36
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.041 r_dihedral_angle_4_deg 18.913 r_dihedral_angle_3_deg 13.902 r_dihedral_angle_1_deg 4.62 r_scangle_it 1.653 r_scbond_it 1.051 r_angle_refined_deg 1.049 r_mcangle_it 0.718 r_mcbond_it 0.427 r_symmetry_vdw_refined 0.314
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.041 r_dihedral_angle_4_deg 18.913 r_dihedral_angle_3_deg 13.902 r_dihedral_angle_1_deg 4.62 r_scangle_it 1.653 r_scbond_it 1.051 r_angle_refined_deg 1.049 r_mcangle_it 0.718 r_mcbond_it 0.427 r_symmetry_vdw_refined 0.314 r_nbtor_refined 0.305 r_nbd_refined 0.191 r_symmetry_hbond_refined 0.179 r_xyhbond_nbd_refined 0.126 r_chiral_restr 0.075 r_bond_refined_d 0.009 r_gen_planes_refined 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3344 Nucleic Acid Atoms Solvent Atoms 176 Heterogen Atoms 67
Software Software Software Name Purpose PHASER phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling