X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP82898% PEG 2000 MME, 100mM Tris-HCl,200mM Trimethylamine N-oxide dihydrate, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 289K
Crystal Properties
Matthews coefficientSolvent content
2.1141.79

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 71.029α = 90
b = 67.164β = 97.58
c = 83.405γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 315r2007-11-20MSINGLE WAVELENGTH
21x-ray100CCDMARMOSAIC 225 mm CCD2008-06-29MMAD
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSPRING-8 BEAMLINE BL41XU1.00716SPring-8BL41XU
2SYNCHROTRONSLS BEAMLINE X06SA1.0063, 1.0092SLSX06SA

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
1,23.21599.80.086.513010
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1,23.23.2899.50.4324.26.51272

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSIRASTHROUGHOUT3.21511575126299.480.2910.2890.306RANDOM67.81
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-1.42-0.348.4-7.06
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg41.618
r_dihedral_angle_3_deg24.413
r_dihedral_angle_4_deg20.002
r_mcangle_it10.507
r_dihedral_angle_1_deg8.759
r_mcbond_it7.698
r_angle_refined_deg1.728
r_nbtor_refined0.319
r_nbd_refined0.29
r_symmetry_vdw_refined0.28
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg41.618
r_dihedral_angle_3_deg24.413
r_dihedral_angle_4_deg20.002
r_mcangle_it10.507
r_dihedral_angle_1_deg8.759
r_mcbond_it7.698
r_angle_refined_deg1.728
r_nbtor_refined0.319
r_nbd_refined0.29
r_symmetry_vdw_refined0.28
r_symmetry_hbond_refined0.249
r_xyhbond_nbd_refined0.207
r_chiral_restr0.113
r_scangle_it0.035
r_scbond_it0.027
r_bond_refined_d0.011
r_gen_planes_refined0.007
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms6325
Nucleic Acid Atoms
Solvent Atoms
Heterogen Atoms

Software

Software
Software NamePurpose
HKL-2000data collection
PHENIXmodel building
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling
PHENIXphasing