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Crystal Structure of the Human Rad9-Hus1-Rad1 complex
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 289 8% PEG 2000 MME, 100mM Tris-HCl,200mM Trimethylamine N-oxide dihydrate, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 289K
Crystal Properties Matthews coefficient Solvent content 2.11 41.79
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 71.029 α = 90 b = 67.164 β = 97.58 c = 83.405 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2007-11-20 M SINGLE WAVELENGTH 2 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2008-06-29 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL41XU 1.00716 SPring-8 BL41XU 2 SYNCHROTRON SLS BEAMLINE X06SA 1.0063, 1.0092 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 3.2 15 99.8 0.08 6.5 13010
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1,2 3.2 3.28 99.5 0.432 4.2 6.5 1272
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SIRAS THROUGHOUT 3.2 15 11575 1262 99.48 0.291 0.289 0.306 0.3075 RANDOM 67.81
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.42 -0.34 8.4 -7.06
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.618 r_dihedral_angle_3_deg 24.413 r_dihedral_angle_4_deg 20.002 r_mcangle_it 10.507 r_dihedral_angle_1_deg 8.759 r_mcbond_it 7.698 r_angle_refined_deg 1.728 r_nbtor_refined 0.319 r_nbd_refined 0.29 r_symmetry_vdw_refined 0.28
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.618 r_dihedral_angle_3_deg 24.413 r_dihedral_angle_4_deg 20.002 r_mcangle_it 10.507 r_dihedral_angle_1_deg 8.759 r_mcbond_it 7.698 r_angle_refined_deg 1.728 r_nbtor_refined 0.319 r_nbd_refined 0.29 r_symmetry_vdw_refined 0.28 r_symmetry_hbond_refined 0.249 r_xyhbond_nbd_refined 0.207 r_chiral_restr 0.113 r_scangle_it 0.035 r_scbond_it 0.027 r_bond_refined_d 0.011 r_gen_planes_refined 0.007 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6325 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose HKL-2000 data collection PHENIX model building REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling PHENIX phasing