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HIV Protease inhibitors with pseudo-symmetric cores
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 297 VAPOR DIFFUSION, HANGING DROP, temperature 297K
Crystal Properties Matthews coefficient Solvent content 2.6 52.75
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 67.08 α = 90 b = 61.504 β = 111.12 c = 87.684 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 17-ID 1.0000 APS 17-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 81 21850
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.5 35.14 21850 1189 99.11 0.22838 0.22579 0.2221 0.27532 0.2645 RANDOM 31.263
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.26 0.37 1.19 -2.18
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.234 r_dihedral_angle_4_deg 17.962 r_dihedral_angle_3_deg 15.601 r_dihedral_angle_1_deg 5.501 r_scangle_it 1.628 r_angle_refined_deg 1.12 r_scbond_it 0.957 r_mcangle_it 0.709 r_mcbond_it 0.406 r_nbtor_refined 0.304
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.234 r_dihedral_angle_4_deg 17.962 r_dihedral_angle_3_deg 15.601 r_dihedral_angle_1_deg 5.501 r_scangle_it 1.628 r_angle_refined_deg 1.12 r_scbond_it 0.957 r_mcangle_it 0.709 r_mcbond_it 0.406 r_nbtor_refined 0.304 r_nbd_refined 0.182 r_symmetry_vdw_refined 0.182 r_xyhbond_nbd_refined 0.178 r_symmetry_hbond_refined 0.096 r_chiral_restr 0.066 r_bond_refined_d 0.008 r_gen_planes_refined 0.003 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4542 Nucleic Acid Atoms Solvent Atoms 82 Heterogen Atoms 51
Software Software Software Name Purpose HKL-2000 data collection AMoRE phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling