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Crystal structure of an uncharacterized metalloprotein from Deinococcus radiodurans
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 7.5 294 100mM Hepes pH 7.5, 30% MPD, 500mM ammonium sulfate, vapor diffusion, temperature 294K
Crystal Properties Matthews coefficient Solvent content 1.91 35.68
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 47.207 α = 90 b = 47.207 β = 90 c = 97.787 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm 2009-02-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 31-ID 0.97958 APS 31-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 47.207 99.9 0.067 0.067 17.9 10.5 34252 34218 20.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.5 1.58 100 0.479 0.479 3.6 10.3 5006
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.5 20 34184 34157 1732 99.92 0.184 0.183 0.1847 0.199 0.2009 RANDOM 26.12
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.08 0.08 -0.15
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.048 r_dihedral_angle_4_deg 15.029 r_dihedral_angle_3_deg 12.415 r_dihedral_angle_1_deg 5.279 r_scangle_it 3.488 r_scbond_it 2.158 r_angle_refined_deg 1.365 r_mcangle_it 1.35 r_angle_other_deg 0.913 r_mcbond_it 0.752
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.048 r_dihedral_angle_4_deg 15.029 r_dihedral_angle_3_deg 12.415 r_dihedral_angle_1_deg 5.279 r_scangle_it 3.488 r_scbond_it 2.158 r_angle_refined_deg 1.365 r_mcangle_it 1.35 r_angle_other_deg 0.913 r_mcbond_it 0.752 r_mcbond_other 0.202 r_chiral_restr 0.084 r_bond_refined_d 0.012 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1907 Nucleic Acid Atoms Solvent Atoms 160 Heterogen Atoms 19
Software Software Software Name Purpose SCALA data scaling REFMAC refinement PDB_EXTRACT data extraction MAR345 data collection MOSFLM data reduction SHELXCD phasing SHELXE model building