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Crystal structure of the P21 R1-R7 N-terminal domain of murine MVP
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.6 277 20% PEG 5000, 0.1M Sodium citrate, pH 5.6, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.88 57.29
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 36.523 α = 90 b = 98.892 β = 97.18 c = 140.581 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL PSI PILATUS 6M 2008-05-12 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 0.979,0.976 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 30 96 0.071 10.1 34051 33339 1 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.565 81.84
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.5 30 34051 31662 1677 96.9 0.2333 0.23155 0.2382 0.26691 0.2709 RANDOM 44.42
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.91 -0.04 -1 0.08
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.682 r_dihedral_angle_3_deg 13.617 r_dihedral_angle_4_deg 11.468 r_dihedral_angle_1_deg 5.687 r_angle_refined_deg 0.912 r_angle_other_deg 0.706 r_scangle_it 0.58 r_scbond_it 0.392 r_mcangle_it 0.24 r_mcbond_it 0.193
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.682 r_dihedral_angle_3_deg 13.617 r_dihedral_angle_4_deg 11.468 r_dihedral_angle_1_deg 5.687 r_angle_refined_deg 0.912 r_angle_other_deg 0.706 r_scangle_it 0.58 r_scbond_it 0.392 r_mcangle_it 0.24 r_mcbond_it 0.193 r_nbd_refined 0.174 r_symmetry_vdw_other 0.173 r_nbtor_refined 0.166 r_nbd_other 0.164 r_symmetry_hbond_refined 0.116 r_xyhbond_nbd_refined 0.114 r_symmetry_vdw_refined 0.114 r_nbtor_other 0.076 r_chiral_restr 0.056 r_mcbond_other 0.026 r_bond_refined_d 0.005 r_gen_planes_refined 0.002 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6008 Nucleic Acid Atoms Solvent Atoms 45 Heterogen Atoms 42
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling SHARP phasing DM phasing REFMAC refinement PDB_EXTRACT data extraction ADSC data collection