☰ Navigation Tabs
Structure of the N-terminal domain of the E. coli protein MqsA (YgiT/b3021)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.1 298 30% PEG 4000, 0.1M Tris, 0.2M sodium selenate, pH 8.1, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.48 50.38
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 30.841 α = 90 b = 52.106 β = 90 c = 53.767 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 270 Toroidal focusing mirror 2008-12-04 M SAD 2 1 x-ray 100 CCD ADSC QUANTUM 270 Toroidal focusing mirror 2008-12-04 M SAD 1,2 1
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X6A 0.9787 NSLS X6A 2 SYNCHROTRON NSLS BEAMLINE X6A 0.9321 NSLS X6A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 1.7 50 97.4 0.057 21.1 5 10054 9796 15.9
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1,2 1.7 1.73 96.7 0.262 6.62 5.2 484
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.7 37.42 9308 9308 467 97.57 0.16591 0.16591 0.1649 0.1718 0.18559 0.1939 RANDOM 12.698
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.1 -0.2 0.29
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.498 r_dihedral_angle_4_deg 16.827 r_dihedral_angle_3_deg 9.263 r_scangle_it 5.432 r_dihedral_angle_1_deg 5.111 r_scbond_it 3.761 r_mcangle_it 2.518 r_mcbond_it 1.799 r_angle_refined_deg 1.283 r_angle_other_deg 0.826
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.498 r_dihedral_angle_4_deg 16.827 r_dihedral_angle_3_deg 9.263 r_scangle_it 5.432 r_dihedral_angle_1_deg 5.111 r_scbond_it 3.761 r_mcangle_it 2.518 r_mcbond_it 1.799 r_angle_refined_deg 1.283 r_angle_other_deg 0.826 r_mcbond_other 0.443 r_symmetry_vdw_other 0.278 r_symmetry_vdw_refined 0.238 r_nbd_refined 0.214 r_symmetry_hbond_refined 0.212 r_nbd_other 0.192 r_nbtor_refined 0.168 r_xyhbond_nbd_refined 0.164 r_nbtor_other 0.084 r_chiral_restr 0.081 r_bond_refined_d 0.012 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 511 Nucleic Acid Atoms Solvent Atoms 97 Heterogen Atoms 11
Software Software Software Name Purpose HKL-2000 data collection SHELXS phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling