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Crystal structure of the product Bacillus anthracis glmS ribozyme
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 vapor diffusion, sitting drops 6.8 298 11% PEG 8000, 9% DMSO, 0.02M SODIUM CACODYLATE, 0.02M MAGNESIUM CHLORIDE, 0.15M POTASSIUM CHLORIDE, pH 6.8, vapor diffusion, sitting drops, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.44 49.49
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 49.586 α = 90 b = 229.827 β = 90.16 c = 101.75 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2007-10-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X29A 1.1 NSLS X29A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.7 50 95.6 0.138 13.198 6.5 59605
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.7 2.8 68.4 0.965 3.8 4238
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.9 49.69 50025 2538 99.64 0.249 0.246 0.2124 0.307 0.2287 RANDOM 35.364
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.03 1.47 3.45 -3.41
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.5 r_dihedral_angle_3_deg 17.116 r_dihedral_angle_4_deg 14.121 r_dihedral_angle_1_deg 5.619 r_scangle_it 1.65 r_mcangle_it 1.489 r_angle_refined_deg 1.328 r_scbond_it 0.977 r_mcbond_it 0.943 r_angle_other_deg 0.836
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.5 r_dihedral_angle_3_deg 17.116 r_dihedral_angle_4_deg 14.121 r_dihedral_angle_1_deg 5.619 r_scangle_it 1.65 r_mcangle_it 1.489 r_angle_refined_deg 1.328 r_scbond_it 0.977 r_mcbond_it 0.943 r_angle_other_deg 0.836 r_symmetry_hbond_refined 0.341 r_nbtor_refined 0.225 r_mcbond_other 0.203 r_symmetry_vdw_other 0.202 r_nbd_other 0.201 r_xyhbond_nbd_refined 0.188 r_symmetry_vdw_refined 0.152 r_nbd_refined 0.151 r_metal_ion_refined 0.111 r_nbtor_other 0.077 r_chiral_restr 0.055 r_bond_refined_d 0.006 r_gen_planes_refined 0.004 r_bond_other_d 0.003 r_gen_planes_other 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2864 Nucleic Acid Atoms 12952 Solvent Atoms 21 Heterogen Atoms 19
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data collection HKL-2000 data reduction MOLREP phasing