X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 3FWK 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP4.829322% (w/v) PEG MME 2000, 0.2 M Magnesium sulfate, 0.1 M Sodium acetate, pH 4.8, Temperature 293K, VAPOR DIFFUSION, HANGING DROP
Crystal Properties
Matthews coefficientSolvent content
2.0539.88

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 206.583α = 90
b = 81.481β = 129.79
c = 136.603γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 3152007-12-14MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 19-ID0.97874APS19-ID

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.35501000.07735.9397.438094338094314.7
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.351.499.80.5512.374.837824

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT3FWK1.3532.193804803804801904399.940.154910.1550.1530.187RANDOM18.537
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.240.17-0.070.05
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.927
r_dihedral_angle_4_deg18.899
r_dihedral_angle_3_deg13.298
r_dihedral_angle_1_deg6.577
r_sphericity_free5.062
r_sphericity_bonded4.737
r_scangle_it2.885
r_mcangle_it2.811
r_scbond_it2.141
r_mcbond_it2.019
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.927
r_dihedral_angle_4_deg18.899
r_dihedral_angle_3_deg13.298
r_dihedral_angle_1_deg6.577
r_sphericity_free5.062
r_sphericity_bonded4.737
r_scangle_it2.885
r_mcangle_it2.811
r_scbond_it2.141
r_mcbond_it2.019
r_angle_refined_deg1.521
r_rigid_bond_restr1.509
r_nbtor_refined0.325
r_symmetry_vdw_refined0.23
r_nbd_refined0.214
r_symmetry_hbond_refined0.195
r_xyhbond_nbd_refined0.155
r_chiral_restr0.097
r_metal_ion_refined0.021
r_bond_refined_d0.014
r_gen_planes_refined0.008
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms14968
Nucleic Acid Atoms
Solvent Atoms1870
Heterogen Atoms417

Software

Software
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction
HKL-2000data collection
HKL-2000data reduction
HKL-2000data scaling
MOLREPphasing