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Crystallographic analysis of cytochrome P450 cyp121
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 277 Ammonium sulfate, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.64 53.46
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 77.69 α = 90 b = 77.69 β = 90 c = 262.737 γ = 120
Symmetry Space Group P 65 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray CCD ADSC QUANTUM Q315r M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-2 0.997 ESRF ID23-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.4 94.6 0.069 19.6 8.1 88013 88013
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.4 1.48 71.8 0.62 2.8 5.7 9517
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 1.4 67.27 83383 4409 94.67 0.15246 0.15096 0.149 0.18061 0.18 RANDOM 15.078
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.4 0.2 0.4 -0.6
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.01 r_dihedral_angle_4_deg 17.462 r_dihedral_angle_3_deg 12.415 r_dihedral_angle_1_deg 5.183 r_sphericity_free 4.837 r_scangle_it 3.738 r_sphericity_bonded 3.727 r_scbond_it 3.213 r_rigid_bond_restr 2.681 r_mcangle_it 1.703
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.01 r_dihedral_angle_4_deg 17.462 r_dihedral_angle_3_deg 12.415 r_dihedral_angle_1_deg 5.183 r_sphericity_free 4.837 r_scangle_it 3.738 r_sphericity_bonded 3.727 r_scbond_it 3.213 r_rigid_bond_restr 2.681 r_mcangle_it 1.703 r_angle_refined_deg 1.436 r_mcbond_it 1.2 r_nbtor_refined 0.313 r_nbd_refined 0.216 r_symmetry_hbond_refined 0.193 r_symmetry_vdw_refined 0.177 r_xyhbond_nbd_refined 0.157 r_chiral_restr 0.089 r_bond_refined_d 0.012 r_gen_planes_refined 0.008
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3031 Nucleic Acid Atoms Solvent Atoms 683 Heterogen Atoms 72
Software Software Software Name Purpose ADSC data collection FFT model building REFMAC refinement MOSFLM data reduction SCALA data scaling FFT phasing