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Crystal Structure of NiSOD Y9F mutant at 1.9 A
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 293 PEG 550 MME, Bis-Tris, pH 6.5, VAPOR DIFFUSION, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.35 47.69
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 59.876 α = 90 b = 111.577 β = 90 c = 111.553 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC 2007-08-14 SINGLE WAVELENGTH WITH ANOMALOUS
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X6A NSLS X6A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.87 20.9 95.3 0.03 42.1 7.1 29628
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.87 1.94 91 0.337 3 5.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.87 20.91 31050 27302 1452 92.6 0.186 0.183 0.1819 0.254 0.2562 RANDOM 30.68
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.01 0.05 -0.06
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.239 r_dihedral_angle_4_deg 19.75 r_dihedral_angle_3_deg 14.663 r_dihedral_angle_1_deg 5.04 r_scangle_it 4.179 r_scbond_it 2.536 r_mcangle_it 1.552 r_angle_refined_deg 1.467 r_mcbond_it 0.906 r_symmetry_vdw_refined 0.315
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.239 r_dihedral_angle_4_deg 19.75 r_dihedral_angle_3_deg 14.663 r_dihedral_angle_1_deg 5.04 r_scangle_it 4.179 r_scbond_it 2.536 r_mcangle_it 1.552 r_angle_refined_deg 1.467 r_mcbond_it 0.906 r_symmetry_vdw_refined 0.315 r_nbtor_refined 0.304 r_symmetry_hbond_refined 0.225 r_nbd_refined 0.221 r_xyhbond_nbd_refined 0.212 r_chiral_restr 0.108 r_bond_refined_d 0.017 r_gen_planes_refined 0.007 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2791 Nucleic Acid Atoms Solvent Atoms 458 Heterogen Atoms 6
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling MOLREP phasing REFMAC refinement PDB_EXTRACT data extraction