X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 3G3APDB ENTRY 3G3A

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1EVAPORATION8.52968% (w/v) polyethylene glycol 8000, 0.1 M Tris-HCl, pH 8.5, EVAPORATION, temperature 296K
Crystal Properties
Matthews coefficientSolvent content
2.7655.44

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 62.874α = 90
b = 106.244β = 90
c = 218.544γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 3152008-07-01MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONNSLS BEAMLINE X29A1.0NSLSX29A

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.4300.0929.113.660645
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
2.42.480.4186.714

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 3G3A2.43055191292199.860.244260.242020.28612RANDOM44.722
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-1.920.111.81
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.305
r_dihedral_angle_4_deg20.365
r_dihedral_angle_3_deg16.741
r_dihedral_angle_1_deg6.582
r_scangle_it3.287
r_scbond_it2.184
r_angle_refined_deg1.615
r_mcangle_it1.443
r_mcbond_it0.835
r_nbtor_refined0.306
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.305
r_dihedral_angle_4_deg20.365
r_dihedral_angle_3_deg16.741
r_dihedral_angle_1_deg6.582
r_scangle_it3.287
r_scbond_it2.184
r_angle_refined_deg1.615
r_mcangle_it1.443
r_mcbond_it0.835
r_nbtor_refined0.306
r_nbd_refined0.221
r_symmetry_vdw_refined0.186
r_xyhbond_nbd_refined0.179
r_symmetry_hbond_refined0.167
r_chiral_restr0.11
r_bond_refined_d0.016
r_gen_planes_refined0.006
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms8291
Nucleic Acid Atoms
Solvent Atoms180
Heterogen Atoms

Software

Software
Software NamePurpose
HKL-2000data collection
PHASERphasing
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling