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Structure of putative 2-dehydropantoate 2-reductase from staphylococcus aureus
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 298 0.1M Bis-tris pH 6.5, 10% PEG 10K, 0.2M 0.1M Ammonium Acetate, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.52 51.18
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 75.239 α = 103.66 b = 99.64 β = 105.23 c = 100.261 γ = 102.26
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2008-12-04 SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X29A 0.979 NSLS X29A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 50 98.6 0.104 16.202 5 113899
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.38 97.8 0.587 5 11331
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.3 50 113884 5744 98.16 0.203 0.2 0.1977 0.26 0.2553 RANDOM 36.966
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.17 0.25 0.72 0.99 0.41 -0.14
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.162 r_dihedral_angle_4_deg 18.905 r_dihedral_angle_3_deg 18.132 r_dihedral_angle_1_deg 5.897 r_scangle_it 3.363 r_scbond_it 2.037 r_mcangle_it 1.378 r_angle_refined_deg 1.353 r_mcbond_it 0.714 r_chiral_restr 0.096
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.162 r_dihedral_angle_4_deg 18.905 r_dihedral_angle_3_deg 18.132 r_dihedral_angle_1_deg 5.897 r_scangle_it 3.363 r_scbond_it 2.037 r_mcangle_it 1.378 r_angle_refined_deg 1.353 r_mcbond_it 0.714 r_chiral_restr 0.096 r_bond_refined_d 0.013 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 18282 Nucleic Acid Atoms Solvent Atoms 396 Heterogen Atoms
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction CBASS data collection HKL-2000 data reduction SHELXD phasing PHENIX phasing