X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 3G0BPDB entry 3G0B

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION7.827722.5% PEG MME 200, 0.1M Bicine pH 7.8, VAPOR DIFFUSION, temperature 277K
Crystal Properties
Matthews coefficientSolvent content
2.957.56

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 122.844α = 90
b = 122.774β = 114.68
c = 145.106γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 315rMSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONALS BEAMLINE 5.0.31.0000ALS5.0.3

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.695099.90.09512.6234108584
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
2.692.751000.6083.87174

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB entry 3G0B2.6950108370541299.150.1980.1950.248RANDOM48.26
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-3.41-0.584.37-1.45
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.599
r_dihedral_angle_4_deg17.998
r_dihedral_angle_3_deg16.767
r_dihedral_angle_1_deg5.22
r_scangle_it1.666
r_angle_refined_deg1.258
r_scbond_it0.996
r_mcangle_it0.722
r_mcbond_it0.404
r_nbtor_refined0.313
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.599
r_dihedral_angle_4_deg17.998
r_dihedral_angle_3_deg16.767
r_dihedral_angle_1_deg5.22
r_scangle_it1.666
r_angle_refined_deg1.258
r_scbond_it0.996
r_mcangle_it0.722
r_mcbond_it0.404
r_nbtor_refined0.313
r_nbd_refined0.2
r_symmetry_vdw_refined0.185
r_xyhbond_nbd_refined0.133
r_symmetry_hbond_refined0.132
r_chiral_restr0.091
r_bond_refined_d0.009
r_gen_planes_refined0.003
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms23743
Nucleic Acid Atoms
Solvent Atoms774
Heterogen Atoms416

Software

Software
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction
ADSCdata collection
HKL-2000data reduction
HKL-2000data scaling
PHASERphasing