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Crystal Structure of PYK2 complexed with BIRB796
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 295 0.1M Bis-Tris, 0.2M MgCls, 20-27% PEG3350, 1mM TCEP, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.08 40.76
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 37.503 α = 90 b = 81.694 β = 90 c = 87.256 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray CCD ADSC QUANTUM 210 2007-01-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 17-ID 1.54 APS 17-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.75 30 93 0.07 14.8 4.4 27824
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.75 1.86 90.3 0.37 3.1 4.4 2932
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 1.75 30 25335 1327 95.81 0.1922 0.19053 0.1893 0.2236 0.2204 RANDOM 18.519
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.37 0.49 -0.12
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.579 r_dihedral_angle_4_deg 14.377 r_dihedral_angle_3_deg 13.105 r_dihedral_angle_1_deg 5.082 r_scangle_it 3.07 r_scbond_it 2.013 r_angle_refined_deg 1.473 r_mcangle_it 1.315 r_mcbond_it 0.841 r_nbtor_refined 0.311
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.579 r_dihedral_angle_4_deg 14.377 r_dihedral_angle_3_deg 13.105 r_dihedral_angle_1_deg 5.082 r_scangle_it 3.07 r_scbond_it 2.013 r_angle_refined_deg 1.473 r_mcangle_it 1.315 r_mcbond_it 0.841 r_nbtor_refined 0.311 r_nbd_refined 0.204 r_symmetry_vdw_refined 0.183 r_symmetry_hbond_refined 0.139 r_xyhbond_nbd_refined 0.129 r_chiral_restr 0.079 r_bond_refined_d 0.01 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2059 Nucleic Acid Atoms Solvent Atoms 261 Heterogen Atoms 39
Software Software Software Name Purpose REFMAC refinement