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Crystal structure of PYK2 complexed with ATPgS
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.5 298 0.1M Citrate, 0.5-1.5M Lithium Sulfate, 0.2-0.4M Ammonium Sulfate, pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.27 45.74
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 36.946 α = 90 b = 92.663 β = 92.45 c = 42.671 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray CCD ADSC QUANTUM 210 2007-01-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 17-ID APS 17-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 30 94.1 0.04 18.4 2.3 15837
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.1 2.18 90.5 0.24 2.7 2.2 1527
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 2.1 30 14989 802 94.06 0.21227 0.21071 0.1906 0.23898 0.2327 RANDOM 47.727
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.19 -0.77 -1.58 1.7
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.202 r_dihedral_angle_4_deg 19.604 r_dihedral_angle_3_deg 18.547 r_dihedral_angle_1_deg 7.007 r_scangle_it 3.455 r_scbond_it 2.248 r_mcangle_it 1.726 r_angle_refined_deg 1.713 r_mcbond_it 1.05 r_nbtor_refined 0.313
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.202 r_dihedral_angle_4_deg 19.604 r_dihedral_angle_3_deg 18.547 r_dihedral_angle_1_deg 7.007 r_scangle_it 3.455 r_scbond_it 2.248 r_mcangle_it 1.726 r_angle_refined_deg 1.713 r_mcbond_it 1.05 r_nbtor_refined 0.313 r_symmetry_hbond_refined 0.252 r_nbd_refined 0.221 r_symmetry_vdw_refined 0.22 r_xyhbond_nbd_refined 0.205 r_chiral_restr 0.147 r_bond_refined_d 0.015 r_gen_planes_refined 0.007 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2098 Nucleic Acid Atoms Solvent Atoms 105 Heterogen Atoms 41
Software Software Software Name Purpose REFMAC refinement