☰ Navigation Tabs
Crystal Structures of Hsc70/Bag1 in Complex with Small Molecule Inhibitors
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1HX1 PDB ENRTY 1HX1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 293 15% PEG3350, 0.1M Tris buffer, 25mM sodium-potassium tartrate, pH8.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.28 45.95
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 40.576 α = 90 b = 120.827 β = 106.62 c = 53.519 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV++ mirrors 2008-11-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RUH3R 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 25 95.8 0.127 4.8 4.17 37186 37186 1 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.9 1.97 87.2 0.54 1.1 4.01
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (I) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENRTY 1HX1 2 25 1 1 29796 29796 2474 96.88 0.21838 0.214 0.2163 0.27158 0.224 RANDOM 31.728
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.6 -0.69 -0.26 0.47
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.282 r_dihedral_angle_4_deg 19.208 r_dihedral_angle_3_deg 16.857 r_dihedral_angle_1_deg 5.741 r_scangle_it 2.59 r_scbond_it 1.653 r_angle_refined_deg 1.272 r_mcangle_it 1.123 r_mcbond_it 0.651 r_nbtor_refined 0.292
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.282 r_dihedral_angle_4_deg 19.208 r_dihedral_angle_3_deg 16.857 r_dihedral_angle_1_deg 5.741 r_scangle_it 2.59 r_scbond_it 1.653 r_angle_refined_deg 1.272 r_mcangle_it 1.123 r_mcbond_it 0.651 r_nbtor_refined 0.292 r_symmetry_vdw_refined 0.209 r_nbd_refined 0.197 r_xyhbond_nbd_refined 0.158 r_symmetry_hbond_refined 0.146 r_chiral_restr 0.08 r_bond_refined_d 0.011 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3806 Nucleic Acid Atoms Solvent Atoms 309 Heterogen Atoms 20
Software Software Software Name Purpose CrystalClear data collection MOLREP phasing REFMAC refinement d*TREK data reduction d*TREK data scaling