X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1L6M 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP4.52911.0-1.4M Ammonium sulfate, 50 mM Sodium Chloride, 200 mM Lithium Sulfate, 100 mM Sodium Acetate, pH 4.5, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties
Matthews coefficientSolvent content
3.2161.66

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 115.421α = 90
b = 115.421β = 90
c = 118.801γ = 90
Symmetry
Space GroupP 41 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 2102008-10-30MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONALS BEAMLINE 5.0.11.0ALS5.0.1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.35099.90.05531.57.9683213637550.4
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
2.32.381000.395.096.83562

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONTHROUGHOUT1L6M2.340.7932869344399.80.258270.255620.28376RANDOM39.229
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.060.06-0.13
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.957
r_dihedral_angle_4_deg15.877
r_dihedral_angle_3_deg12.846
r_dihedral_angle_1_deg4.865
r_scangle_it1.247
r_angle_refined_deg0.925
r_angle_other_deg0.822
r_scbond_it0.747
r_mcangle_it0.694
r_mcbond_it0.366
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.957
r_dihedral_angle_4_deg15.877
r_dihedral_angle_3_deg12.846
r_dihedral_angle_1_deg4.865
r_scangle_it1.247
r_angle_refined_deg0.925
r_angle_other_deg0.822
r_scbond_it0.747
r_mcangle_it0.694
r_mcbond_it0.366
r_nbd_other0.176
r_nbtor_refined0.171
r_metal_ion_refined0.168
r_nbd_refined0.165
r_symmetry_vdw_other0.118
r_symmetry_hbond_refined0.11
r_symmetry_vdw_refined0.101
r_xyhbond_nbd_refined0.092
r_nbtor_other0.078
r_chiral_restr0.063
r_mcbond_other0.034
r_bond_refined_d0.005
r_bond_other_d0.002
r_gen_planes_refined0.002
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3683
Nucleic Acid Atoms
Solvent Atoms243
Heterogen Atoms99

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling
REFMACphasing