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C-terminal domain of putative thiol-disulfide oxidoreductase from Bacteroides thetaiotaomicron.
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.5 297 0.2 M ammonium acetate, 0.1 M Tris buffer, 25% PEG-3350, pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 297K
Crystal Properties Matthews coefficient Solvent content 2.59 52.55
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 63.441 α = 90 b = 96.704 β = 90 c = 116.489 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD SBC-3 2008-11-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-BM 0.9792 APS 19-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.74 36.5 99.9 0.076 27.517 7.8 74076 74076 27.7
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.74 1.77 98.5 0.741 2.04 5.3 3620
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.74 36.5 73989 73989 3734 99.55 0.166 0.166 0.164 0.1748 0.204 0.2136 RANDOM 18.031
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.34 -0.45 0.79
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.714 r_dihedral_angle_4_deg 18.589 r_dihedral_angle_3_deg 15.02 r_dihedral_angle_1_deg 5.655 r_scangle_it 4.664 r_scbond_it 2.84 r_mcangle_it 1.755 r_angle_refined_deg 1.633 r_mcbond_it 0.991 r_angle_other_deg 0.934
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.714 r_dihedral_angle_4_deg 18.589 r_dihedral_angle_3_deg 15.02 r_dihedral_angle_1_deg 5.655 r_scangle_it 4.664 r_scbond_it 2.84 r_mcangle_it 1.755 r_angle_refined_deg 1.633 r_mcbond_it 0.991 r_angle_other_deg 0.934 r_mcbond_other 0.317 r_chiral_restr 0.106 r_bond_refined_d 0.019 r_gen_planes_refined 0.008 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4788 Nucleic Acid Atoms Solvent Atoms 733 Heterogen Atoms 20
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction SBC-Collect data collection HKL-3000 data reduction SHELXD phasing MLPHARE phasing DM phasing SOLVE phasing RESOLVE phasing HKL-3000 phasing