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Pseudomonas aeruginosa Azurin with mutated metal-binding loop sequence (CAAAAHAAAM)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3FS9
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 293 100mM Hepes pH 8.0, 34% PEG 4000, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 1.92 35.99
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 36.686 α = 111.96 b = 56.7 β = 95.38 c = 58.242 γ = 105.12
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 93 IMAGE PLATE MAR scanner 345 mm plate 2007-09-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RU300 1.54
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 49.8 91.7 0.092 11.9 3.9 25606 25606 14.6
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.1 81.5 0.266 5.4 3.8 3332
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3FS9 2 49.8 24283 24283 1309 92.64 0.19267 0.19267 0.18922 0.1933 0.25573 0.2563 RANDOM 11.861
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.03 -0.5 0.24 0.25 0.12 -0.35
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.182 r_dihedral_angle_3_deg 13.595 r_dihedral_angle_1_deg 6.3 r_dihedral_angle_4_deg 3.877 r_scangle_it 2.002 r_scbond_it 1.263 r_angle_refined_deg 1.131 r_mcangle_it 0.845 r_angle_other_deg 0.828 r_mcbond_it 0.469
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.182 r_dihedral_angle_3_deg 13.595 r_dihedral_angle_1_deg 6.3 r_dihedral_angle_4_deg 3.877 r_scangle_it 2.002 r_scbond_it 1.263 r_angle_refined_deg 1.131 r_mcangle_it 0.845 r_angle_other_deg 0.828 r_mcbond_it 0.469 r_mcbond_other 0.084 r_chiral_restr 0.068 r_bond_refined_d 0.009 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3744 Nucleic Acid Atoms Solvent Atoms 233 Heterogen Atoms 4
Software Software Software Name Purpose MAR345dtb data collection PHASER phasing REFMAC refinement MOSFLM data reduction SCALA data scaling