☰ Navigation Tabs
The 2.25 A crystal structure of LipL32, the major surface antigen of Leptospira interrogans serovar Copenhageni
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.7 289 1.4 M trisodium citrate, 0.1 M HEPES, 20 mM triethanolamine-HCl, pH 7.7, VAPOR DIFFUSION, SITTING DROP, temperature 289K
Crystal Properties Matthews coefficient Solvent content 4 69.24
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 126.725 α = 90 b = 126.725 β = 90 c = 95.996 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2008-06-27 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON LNLS BEAMLINE W01B-MX2 1.459, 0.97814, 0.97831 LNLS W01B-MX2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.25 40 99.4 0.071 22 10.5 42419 42419
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.25 2.33 95.8 0.466 1.9 5.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.25 35 40149 2129 99.38 0.18358 0.18134 0.2465 0.22712 0.2842 RANDOM 40.12
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.33 1.17 2.33 -3.5
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.005 r_dihedral_angle_3_deg 15.989 r_dihedral_angle_4_deg 15.464 r_dihedral_angle_1_deg 6.822 r_scangle_it 2.237 r_scbond_it 1.764 r_angle_refined_deg 1.581 r_mcangle_it 1.12 r_angle_other_deg 0.925 r_mcbond_it 0.802
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.005 r_dihedral_angle_3_deg 15.989 r_dihedral_angle_4_deg 15.464 r_dihedral_angle_1_deg 6.822 r_scangle_it 2.237 r_scbond_it 1.764 r_angle_refined_deg 1.581 r_mcangle_it 1.12 r_angle_other_deg 0.925 r_mcbond_it 0.802 r_symmetry_vdw_other 0.287 r_symmetry_vdw_refined 0.262 r_nbd_other 0.207 r_nbd_refined 0.197 r_nbtor_refined 0.179 r_xyhbond_nbd_refined 0.179 r_mcbond_other 0.179 r_symmetry_hbond_refined 0.158 r_chiral_restr 0.097 r_nbtor_other 0.09 r_xyhbond_nbd_other 0.05 r_bond_refined_d 0.017 r_gen_planes_refined 0.006 r_bond_other_d 0.003 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3624 Nucleic Acid Atoms Solvent Atoms 272 Heterogen Atoms 23
Software Software Software Name Purpose MAR345 data collection SHARP phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling