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S. aureus DHFR complexed with NADPH and TMP
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5.5 25% PEG 3350, 200mM NaCl, 100mM bis-Tris, pH5.5
Crystal Properties Matthews coefficient Solvent content 2.7 54.41
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 79.328 α = 90 b = 79.328 β = 90 c = 107.781 γ = 120
Symmetry Space Group P 61 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MAR scanner 345 mm plate M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE ENRAF-NONIUS FR591
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 20 99.3 10800 10800 1 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.34 97.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.2 20 10128 507 99.47 0.24119 0.23919 0.2393 0.28002 0.28 RANDOM 20.031
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.05 0.02 0.05 -0.07
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 22.751 r_dihedral_angle_1_deg 9.631 r_angle_other_deg 1.845 r_mcangle_it 0.986 r_angle_refined_deg 0.901 r_symmetry_hbond_other 0.733 r_scangle_it 0.714 r_symmetry_vdw_refined 0.692 r_mcbond_it 0.562 r_symmetry_vdw_other 0.528
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 22.751 r_dihedral_angle_1_deg 9.631 r_angle_other_deg 1.845 r_mcangle_it 0.986 r_angle_refined_deg 0.901 r_symmetry_hbond_other 0.733 r_scangle_it 0.714 r_symmetry_vdw_refined 0.692 r_mcbond_it 0.562 r_symmetry_vdw_other 0.528 r_scbond_it 0.433 r_symmetry_hbond_refined 0.341 r_nbd_other 0.249 r_nbd_refined 0.235 r_xyhbond_nbd_refined 0.215 r_xyhbond_nbd_other 0.173 r_chiral_restr 0.054 r_bond_refined_d 0.005 r_bond_other_d 0.002 r_gen_planes_refined 0.002 r_gen_planes_other 0.002 r_dihedral_angle_2_deg r_dihedral_angle_4_deg r_nbtor_refined r_nbtor_other r_metal_ion_refined r_metal_ion_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1272 Nucleic Acid Atoms Solvent Atoms 108 Heterogen Atoms 69
Software Software Software Name Purpose DENZO data reduction AMoRE phasing REFMAC refinement SCALEPACK data scaling