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Staphylococcus aureus F98Y DHFR complexed with iclaprim
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5.5 25% PEG 3350, 200mM NaCl, 100mM bis-Tris, pH5.5
Crystal Properties Matthews coefficient Solvent content 2.71 54.53
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 79.2 α = 90 b = 79.2 β = 90 c = 108.531 γ = 120
Symmetry Space Group P 61 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MAR scanner 345 mm plate M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE ENRAF-NONIUS FR591
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.35 20 98.6 8774 8774 1 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.35 2.5 91.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.35 20 8325 416 98.6 0.22636 0.22283 0.2303 0.29408 0.3027 RANDOM 29.942
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.07 -0.03 -0.07 0.1
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.851 r_dihedral_angle_3_deg 20.208 r_dihedral_angle_4_deg 13.157 r_dihedral_angle_1_deg 9.427 r_angle_refined_deg 1.32 r_mcangle_it 0.678 r_angle_other_deg 0.637 r_mcbond_it 0.59 r_symmetry_vdw_refined 0.471 r_scangle_it 0.447
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.851 r_dihedral_angle_3_deg 20.208 r_dihedral_angle_4_deg 13.157 r_dihedral_angle_1_deg 9.427 r_angle_refined_deg 1.32 r_mcangle_it 0.678 r_angle_other_deg 0.637 r_mcbond_it 0.59 r_symmetry_vdw_refined 0.471 r_scangle_it 0.447 r_symmetry_vdw_other 0.379 r_scbond_it 0.286 r_nbd_other 0.281 r_nbd_refined 0.265 r_xyhbond_nbd_refined 0.251 r_symmetry_hbond_refined 0.217 r_nbtor_refined 0.202 r_nbtor_other 0.091 r_mcbond_other 0.063 r_chiral_restr 0.039 r_bond_refined_d 0.006 r_gen_planes_refined 0.002 r_bond_other_d r_gen_planes_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1273 Nucleic Acid Atoms Solvent Atoms 103 Heterogen Atoms 74
Software Software Software Name Purpose DENZO data reduction AMoRE phasing REFMAC refinement SCALEPACK data scaling