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Crystal structure of Tom71 complexed with Ssa1 C-terminal fragment
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3FP3 PDB entry 3FP3
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 298 PEG6K, 5% Ethylene Glyco, 0.15M NaCl, Tris 10mM, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 3.38 63.64
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 47.82 α = 90 b = 116.025 β = 90 c = 150.649 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 200 CCD MARMOSAIC 225 mm CCD 2008-10-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-BM 1.00 APS 22-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.14 8 0.89 39166 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.14 0.89
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 3FP3 2.14 8 2 39116 39166 2100 89.36 0.21036 0.20768 0.2568 0.26127 0.29 RANDOM 17.851
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.01 0.01 -0.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.12 r_dihedral_angle_4_deg 19.751 r_dihedral_angle_3_deg 18.031 r_dihedral_angle_1_deg 6.396 r_scangle_it 4.522 r_scbond_it 3.01 r_angle_refined_deg 1.787 r_mcangle_it 1.698 r_mcbond_it 0.993 r_nbtor_refined 0.304
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.12 r_dihedral_angle_4_deg 19.751 r_dihedral_angle_3_deg 18.031 r_dihedral_angle_1_deg 6.396 r_scangle_it 4.522 r_scbond_it 3.01 r_angle_refined_deg 1.787 r_mcangle_it 1.698 r_mcbond_it 0.993 r_nbtor_refined 0.304 r_symmetry_hbond_refined 0.26 r_nbd_refined 0.227 r_xyhbond_nbd_refined 0.212 r_symmetry_vdw_refined 0.194 r_chiral_restr 0.127 r_metal_ion_refined 0.111 r_bond_refined_d 0.023 r_gen_planes_refined 0.008 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4098 Nucleic Acid Atoms Solvent Atoms 264 Heterogen Atoms 29
Software Software Software Name Purpose HKL-2000 data collection PHASER phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling