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Human poly(ADP-ribose) polymerase 3, catalytic fragment in complex with an inhibitor 3-aminobenzoic acid
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 7 298 1.8 M DL-Malic acid, 0.1 M Bis-Tris propane - seeding, pH 7.0, VAPOR DIFFUSION, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.05 40.01
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 55.24 α = 90 b = 56.7 β = 112.86 c = 56.48 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2006-09-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM14 0.98000 ESRF BM14
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 20 98.5 0.156 8.73 3.7 14283 14283 20.8
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.3 2.4 96.3 0.48 2.73 3.65 1666
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.3 19.17 13560 13560 715 99.08 0.1817 0.1817 0.17782 0.25379 0.2088 RANDOM 16.759
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.12 0.01 -0.19 0.08
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.22 r_dihedral_angle_4_deg 23.788 r_dihedral_angle_3_deg 15.946 r_dihedral_angle_1_deg 6.644 r_scangle_it 2.709 r_scbond_it 1.675 r_angle_refined_deg 1.321 r_mcangle_it 1.186 r_angle_other_deg 0.87 r_mcbond_it 0.641
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.22 r_dihedral_angle_4_deg 23.788 r_dihedral_angle_3_deg 15.946 r_dihedral_angle_1_deg 6.644 r_scangle_it 2.709 r_scbond_it 1.675 r_angle_refined_deg 1.321 r_mcangle_it 1.186 r_angle_other_deg 0.87 r_mcbond_it 0.641 r_mcbond_other 0.111 r_chiral_restr 0.075 r_bond_refined_d 0.012 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2766 Nucleic Acid Atoms Solvent Atoms 144 Heterogen Atoms 10
Software Software Software Name Purpose ProDC data collection PHASER phasing REFMAC refinement XDS data reduction XSCALE data scaling