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Crystal structure determination of indian flying fox (Pteropus giganteus) at 1.62 A resolution
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1G0B
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 293 0.002ml of protein solution with 0.002ml of well solution containing 40% of PEG 3350 as precipitant, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.46 50.01
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 94.969 α = 90 b = 64.669 β = 129.61 c = 64.766 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MAR 345 dtp mirrors 2008-11-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RU300 1.54179
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.62 20 0.0344 12.2 2.58 35677 19.347
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.62 1.7 0.1503 2.62 1726
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1G0B 1.62 17.45 34574 1887 97.79 0.2103 0.20756 0.2036 0.26306 0.2585 RANDOM 19.347
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.602 r_dihedral_angle_4_deg 14.99 r_dihedral_angle_3_deg 13.121 r_dihedral_angle_1_deg 4.922 r_scangle_it 2.029 r_scbond_it 1.389 r_angle_refined_deg 1.164 r_mcangle_it 0.791 r_mcbond_it 0.491 r_nbtor_refined 0.281
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.602 r_dihedral_angle_4_deg 14.99 r_dihedral_angle_3_deg 13.121 r_dihedral_angle_1_deg 4.922 r_scangle_it 2.029 r_scbond_it 1.389 r_angle_refined_deg 1.164 r_mcangle_it 0.791 r_mcbond_it 0.491 r_nbtor_refined 0.281 r_symmetry_vdw_refined 0.191 r_nbd_refined 0.183 r_xyhbond_nbd_refined 0.105 r_symmetry_hbond_refined 0.098 r_chiral_restr 0.077 r_bond_refined_d 0.013 r_metal_ion_refined 0.009 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2197 Nucleic Acid Atoms Solvent Atoms 545 Heterogen Atoms 90
Software Software Software Name Purpose MAR345dtb data collection PHASER phasing REFMAC refinement AUTOMAR data reduction SCALEPACK data scaling