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CRYSTAL STRUCTURE OF A NTF2-LIKE PROTEIN (BXE_B1094) FROM BURKHOLDERIA XENOVORANS LB400 AT 1.59 A RESOLUTION
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 10.5 277 30.0000% PEG-400, 0.1M CAPS pH 10.5, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.31 46.64
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 45.95 α = 90 b = 66.08 β = 90 c = 91 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD Adjustable focusing mirrors in K-B geometry 2008-10-11 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 23-ID-B 0.94645,0.97967 APS 23-ID-B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.59 29.037 99 0.044 14.92 4.6 37939 -3 20.169
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.59 1.65 99.4 0.446 1.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.59 29.037 37883 1890 99.69 0.184 0.183 0.1867 0.211 0.2145 RANDOM 23.121
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.67 0.09 -0.76
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.782 r_dihedral_angle_4_deg 15.995 r_dihedral_angle_3_deg 13.872 r_dihedral_angle_1_deg 5.683 r_scangle_it 5.554 r_scbond_it 4.22 r_mcangle_it 2.62 r_mcbond_it 1.952 r_angle_refined_deg 1.553 r_angle_other_deg 0.949
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.782 r_dihedral_angle_4_deg 15.995 r_dihedral_angle_3_deg 13.872 r_dihedral_angle_1_deg 5.683 r_scangle_it 5.554 r_scbond_it 4.22 r_mcangle_it 2.62 r_mcbond_it 1.952 r_angle_refined_deg 1.553 r_angle_other_deg 0.949 r_mcbond_other 0.47 r_symmetry_vdw_other 0.346 r_nbd_refined 0.212 r_nbd_other 0.208 r_symmetry_vdw_refined 0.202 r_nbtor_refined 0.172 r_symmetry_hbond_refined 0.155 r_xyhbond_nbd_refined 0.147 r_chiral_restr 0.089 r_nbtor_other 0.088 r_bond_refined_d 0.016 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2028 Nucleic Acid Atoms Solvent Atoms 329 Heterogen Atoms 26
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SHELX phasing MolProbity model building XSCALE data scaling PDB_EXTRACT data extraction XDS data reduction SHELXD phasing autoSHARP phasing