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CRYSTAL STRUCTURE OF A PUTATIVE ANTIBIOTIC BIOSYNTHESIS MONOOXYGENASE (SPO2313) FROM SILICIBACTER POMEROYI DSS-3 AT 1.30 A RESOLUTION
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.2 277 0.2000M NH4I, 20.0000% PEG-3350, No Buffer pH 6.2, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.52 51.17
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 78.76 α = 90 b = 78.76 β = 90 c = 69.81 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD Adjustable focusing mirrors in K-B geometry 2008-10-11 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 23-ID-B 0.94645,0.97967 APS 23-ID-B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.3 26.118 98.7 0.06 14.22 60325 -3 10.966
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.3 1.35 96.6 0.435 2.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.3 26.118 60282 3041 99.87 0.131 0.13 0.1403 0.15 0.1567 RANDOM 14.97
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.02 0.01 0.02 -0.02
RMS Deviations Key Refinement Restraint Deviation TORSION ANGLES, PERUNL 2 (DEGREES) 34.886 TORSION ANGLES, PERUNL 4 (DEGREES) 17.18 TORSION ANGLES, PERUNL 3 (DEGREES) 13.462 r_sphericity_free 6.198 TORSION ANGLES, PERUNL 1 (DEGREES) 5.285 r_scangle_it 4.724 r_scbond_it 3.551 r_sphericity_bonded 3.087 r_mcangle_it 2.376 r_angle_other_deg 1.69
RMS Deviations Key Refinement Restraint Deviation TORSION ANGLES, PERUNL 2 (DEGREES) 34.886 TORSION ANGLES, PERUNL 4 (DEGREES) 17.18 TORSION ANGLES, PERUNL 3 (DEGREES) 13.462 r_sphericity_free 6.198 TORSION ANGLES, PERUNL 1 (DEGREES) 5.285 r_scangle_it 4.724 r_scbond_it 3.551 r_sphericity_bonded 3.087 r_mcangle_it 2.376 r_angle_other_deg 1.69 r_angle_refined_deg 1.665 r_mcbond_it 1.611 r_rigid_bond_restr 1.316 r_mcbond_other 0.793 r_symmetry_vdw_other 0.253 r_nbd_refined 0.195 r_nbtor_refined 0.171 r_nbd_other 0.165 r_symmetry_vdw_refined 0.149 r_chiral_restr 0.109 r_symmetry_hbond_refined 0.095 r_xyhbond_nbd_refined 0.089 r_nbtor_other 0.082 r_bond_refined_d 0.014 r_gen_planes_refined 0.007 r_bond_other_d 0.005 r_gen_planes_other 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1536 Nucleic Acid Atoms Solvent Atoms 289 Heterogen Atoms 31
Software Software Software Name Purpose MolProbity model building PHENIX refinement SOLVE phasing REFMAC refinement XSCALE data scaling PDB_EXTRACT data extraction XDS data reduction