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HIV-1 RT with pyridone non-nucleoside inhibitor
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.2 293 1.15 M Na-Malonate, 50mM KPO4 pH 7.2, 5% Ethylene Glycol, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.95 58.32
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 117.112 α = 90 b = 153.052 β = 90 c = 153.102 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2007-10-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.2 1.0 ALS 5.0.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 50 74.9 0.074 16.4 4.8 42579 31913 68.9
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.6 2.69 13.1 0.293 2.23 1.3 551
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 2.6 46.78 30250 1660 74.97 0.23673 0.23406 0.2379 0.28453 0.2853 RANDOM 70.794
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.69 -1.01 1.71
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.41 r_dihedral_angle_3_deg 15.978 r_dihedral_angle_4_deg 13.063 r_dihedral_angle_1_deg 5.651 r_angle_refined_deg 0.932 r_angle_other_deg 0.738 r_scangle_it 0.729 r_mcangle_it 0.621 r_scbond_it 0.436 r_mcbond_it 0.35
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.41 r_dihedral_angle_3_deg 15.978 r_dihedral_angle_4_deg 13.063 r_dihedral_angle_1_deg 5.651 r_angle_refined_deg 0.932 r_angle_other_deg 0.738 r_scangle_it 0.729 r_mcangle_it 0.621 r_scbond_it 0.436 r_mcbond_it 0.35 r_nbd_refined 0.194 r_nbtor_refined 0.18 r_symmetry_vdw_other 0.173 r_nbd_other 0.169 r_symmetry_hbond_refined 0.124 r_xyhbond_nbd_refined 0.123 r_nbtor_other 0.083 r_symmetry_vdw_refined 0.07 r_chiral_restr 0.054 r_mcbond_other 0.032 r_bond_refined_d 0.006 r_gen_planes_refined 0.002 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7810 Nucleic Acid Atoms Solvent Atoms 60 Heterogen Atoms 33
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling