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Crystal structure of a phenazine biosynthesis-related protein (phzb2) from pseudomonas aeruginosa at 1.90 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 10.5 277 0.8000M K2HPO4, 0.2000M Li2SO4, 1.2000M NaH2PO4, 0.1M CAPS pH 10.5, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 3.37 63.46
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 105.54 α = 90 b = 105.54 β = 90 c = 80.63 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD Adjustable focusing mirrors in K-B geometry 2008-10-12 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 23-ID-B 0.94645,0.97967 APS 23-ID-B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 28.502 99.8 0.078 10.74 7.5 41139 -3 30.168
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.97 99.1 0.807 1.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.9 28.502 41113 2061 99.86 0.156 0.155 0.1575 0.181 0.1813 RANDOM 33.027
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.61 0.31 0.61 -0.92
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.252 r_dihedral_angle_4_deg 16.51 r_dihedral_angle_3_deg 14.377 r_dihedral_angle_1_deg 6.586 r_scangle_it 6.238 r_scbond_it 4.885 r_mcangle_it 2.587 r_mcbond_it 2.112 r_angle_refined_deg 1.475 r_angle_other_deg 0.923
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.252 r_dihedral_angle_4_deg 16.51 r_dihedral_angle_3_deg 14.377 r_dihedral_angle_1_deg 6.586 r_scangle_it 6.238 r_scbond_it 4.885 r_mcangle_it 2.587 r_mcbond_it 2.112 r_angle_refined_deg 1.475 r_angle_other_deg 0.923 r_mcbond_other 0.521 r_symmetry_vdw_other 0.29 r_nbd_refined 0.214 r_symmetry_hbond_refined 0.206 r_nbd_other 0.205 r_nbtor_refined 0.186 r_xyhbond_nbd_refined 0.174 r_symmetry_vdw_refined 0.131 r_chiral_restr 0.088 r_nbtor_other 0.083 r_bond_refined_d 0.016 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2574 Nucleic Acid Atoms Solvent Atoms 269 Heterogen Atoms 60
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SHELX phasing MolProbity model building XSCALE data scaling PDB_EXTRACT data extraction XDS data reduction SHELXD phasing autoSHARP phasing